Package: MVisAGe 0.2.1

MVisAGe: Compute and Visualize Bivariate Associations

Pearson and Spearman correlation coefficients are commonly used to quantify the strength of bivariate associations of genomic variables. For example, correlations of gene-level DNA copy number and gene expression measurements may be used to assess the impact of DNA copy number changes on gene expression in tumor tissue. 'MVisAGe' enables users to quickly compute and visualize the correlations in order to assess the effect of regional genomic events such as changes in DNA copy number or DNA methylation level. Please see Walter V, Du Y, Danilova L, Hayward MC, Hayes DN, 2018. Cancer Research <doi:10.1158/0008-5472.CAN-17-3464>.

Authors:Vonn Walter [aut, cre]

MVisAGe_0.2.1.tar.gz
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MVisAGe.pdf |MVisAGe.html✨
MVisAGe/json (API)
NEWS

# Install 'MVisAGe' in R:
install.packages('MVisAGe', repos = c('https://vonnwalter23.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • cn.mat - DNA copy number data from 98 head and neck squamous cell carcinoma (HNSC) patients
  • exp.mat - Gene expression data from 100 head and neck squamous cell carcinoma (HNSC) patients
  • gene.annot - Gene annotation data
  • sample.annot - Sample annotation data

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.74 score 11 scripts 166 downloads 11 exports 0 dependencies

Last updated 7 years agofrom:999e6fac45. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 15 2025
R-4.5-winOKMar 15 2025
R-4.5-macOKMar 15 2025
R-4.5-linuxOKMar 15 2025
R-4.4-winOKMar 15 2025
R-4.4-macOKMar 15 2025
R-4.4-linuxOKMar 15 2025
R-4.3-winOKMar 15 2025
R-4.3-macOKMar 15 2025

Exports:cn.region.heatmapcorr.computecorr.list.computedata.prepperm.significanceperm.significance.list.computesmooth.genome.plotsmooth.region.plottcga.cn.converttcga.exp.convertunsmooth.region.plot

Dependencies:

R packages: Static PDF vignettes

Rendered fromMVisAGe_vignette.pdf.asisusingR.rsp::asison Mar 15 2025.

Last update: 2017-05-28
Started: 2017-05-28