Package: MVisAGe 0.2.1

MVisAGe: Compute and Visualize Bivariate Associations

Pearson and Spearman correlation coefficients are commonly used to quantify the strength of bivariate associations of genomic variables. For example, correlations of gene-level DNA copy number and gene expression measurements may be used to assess the impact of DNA copy number changes on gene expression in tumor tissue. 'MVisAGe' enables users to quickly compute and visualize the correlations in order to assess the effect of regional genomic events such as changes in DNA copy number or DNA methylation level. Please see Walter V, Du Y, Danilova L, Hayward MC, Hayes DN, 2018. Cancer Research <doi:10.1158/0008-5472.CAN-17-3464>.

Authors:Vonn Walter [aut, cre]

MVisAGe_0.2.1.tar.gz
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MVisAGe.pdf |MVisAGe.html✨
MVisAGe/json (API)
NEWS

# Install 'MVisAGe' in R:
install.packages('MVisAGe', repos = c('https://vonnwalter23.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • cn.mat - DNA copy number data from 98 head and neck squamous cell carcinoma (HNSC) patients
  • exp.mat - Gene expression data from 100 head and neck squamous cell carcinoma (HNSC) patients
  • gene.annot - Gene annotation data
  • sample.annot - Sample annotation data

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.74 score 11 scripts 146 downloads 11 exports 0 dependencies

Last updated 7 years agofrom:999e6fac45. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-winOKNov 15 2024
R-4.5-linuxOKNov 15 2024
R-4.4-winOKNov 15 2024
R-4.4-macOKNov 15 2024
R-4.3-winOKNov 15 2024
R-4.3-macOKNov 15 2024

Exports:cn.region.heatmapcorr.computecorr.list.computedata.prepperm.significanceperm.significance.list.computesmooth.genome.plotsmooth.region.plottcga.cn.converttcga.exp.convertunsmooth.region.plot

Dependencies:

R packages: Static PDF vignettes

Rendered fromMVisAGe_vignette.pdf.asisusingR.rsp::asison Nov 15 2024.

Last update: 2017-05-28
Started: 2017-05-28